Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family transcriptional regulator | FBD94_00575 | Not Available | Positive | 131744 - 132226 | 18604.6 |
| gnat family n-acetyltransferase | FBD94_00580 | Not Available | Positive | 132210 - 132893 | 25012.4 |
| hypothetical protein | FBD94_00585 | Not Available | Positive | 132976 - 133572 | 23202.3 |
| phosphoheptose isomerase | FBD94_00590 | Not Available | Positive | 133630 - 134127 | 18992.3 |
| acyl-coa desaturase | FBD94_00595 | Not Available | Positive | 134193 - 134924 | 29443.7 |
| sh3 domain-containing protein | FBD94_00600 | Not Available | Negative | 135108 - 135530 | 15363.8 |
| bon domain-containing protein | FBD94_00605 | Not Available | Negative | 135546 - 136049 | 17225.2 |
| sigma-70 family rna polymerase sigma factor | FBD94_00610 | Not Available | Positive | 136385 - 137257 | 32892.8 |
| dead/deah box helicase | FBD94_00615 | Not Available | Negative | 137388 - 138698 | 48161.7 |
| type iia dna topoisomerase subunit b | FBD94_00620 | Not Available | Positive | 138880 - 140781 | 72033.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

