Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme abc transporter atp-binding protein | FBD94_06275 | Not Available | Negative | 1672821 - 1673618 | 29659.3 |
| iron abc transporter permease | FBD94_06280 | Not Available | Negative | 1673620 - 1674666 | 36302.5 |
| hemin abc transporter substrate-binding protein | FBD94_06285 | Not Available | Negative | 1674660 - 1675496 | 29511.1 |
| tonb-dependent receptor | FBD94_06290 | Not Available | Positive | 1675850 - 1678216 | 87456.6 |
| hypothetical protein | FBD94_06295 | Not Available | Positive | 1678231 - 1678893 | 24152.4 |
| hypothetical protein | FBD94_06300 | Not Available | Positive | 1678909 - 1679679 | 27972.3 |
| hypothetical protein | FBD94_06305 | Not Available | Positive | 1679695 - 1680660 | 35256.9 |
| hypothetical protein | FBD94_06310 | Not Available | Positive | 1680667 - 1681614 | 34628.8 |
| biliverdin-producing heme oxygenase | FBD94_06315 | Not Available | Positive | 1681834 - 1682394 | 20409.2 |
| helix-turn-helix transcriptional regulator | FBD94_06320 | Not Available | Positive | 1682394 - 1683389 | 38341.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

