Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate isomerase/epimerase | FBD94_06020 | Not Available | Negative | 1617821 - 1618726 | 32968.8 |
| hypothetical protein | FBD94_06025 | Not Available | Negative | 1618833 - 1619174 | 12082.2 |
| ktsc domain-containing protein | FBD94_06030 | Not Available | Positive | 1619298 - 1619744 | 16860.1 |
| hypothetical protein | FBD94_06035 | Not Available | Positive | 1619831 - 1621372 | 58214.4 |
| gnat family n-acetyltransferase | FBD94_06040 | Not Available | Positive | 1621439 - 1621888 | 16865.3 |
| hypothetical protein | FBD94_06050 | Not Available | Positive | 1622612 - 1622851 | 9390.12 |
| lrp/asnc family transcriptional regulator | FBD94_06055 | Not Available | Negative | 1622852 - 1623319 | 17581.4 |
| sigma-70 family rna polymerase sigma factor | FBD94_06060 | Not Available | Positive | 1623499 - 1624359 | 32825.1 |
| alpha-ketoglutarate-dependent dioxygenase alkb | FBD94_06065 | Not Available | Positive | 1624373 - 1624975 | 23405.9 |
| tetr/acrr family transcriptional regulator | FBD94_06070 | Not Available | Positive | 1625071 - 1625673 | 23045.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

