Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| llm class flavin-dependent oxidoreductase | FBD94_05970 | Not Available | Negative | 1605538 - 1606566 | 37879.5 |
| sigma-70 family rna polymerase sigma factor | FBD94_05975 | Not Available | Positive | 1606695 - 1607537 | 31411.2 |
| carboxymuconolactone decarboxylase family protein | FBD94_05980 | Not Available | Positive | 1607604 - 1608056 | 17139.7 |
| pas domain s-box protein | FBD94_05985 | Not Available | Positive | 1608275 - 1611472 | 120869.0 |
| lysr family transcriptional regulator | FBD94_05990 | Not Available | Negative | 1611459 - 1612373 | 35258.9 |
| histidine ammonia-lyase | FBD94_05995 | Not Available | Positive | 1612450 - 1614027 | 56776.9 |
| urocanate hydratase | FBD94_06000 | Not Available | Positive | 1614067 - 1616067 | 73826.8 |
| zinc metallopeptidase | FBD94_06005 | Not Available | Negative | 1616074 - 1616772 | 25211.6 |
| srpbcc domain-containing protein | FBD94_06010 | Not Available | Negative | 1616854 - 1617345 | 18675.1 |
| winged helix-turn-helix transcriptional regulator | FBD94_06015 | Not Available | Negative | 1617332 - 1617673 | 13066.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

