Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-fucosidase | FBD94_05870 | Not Available | Positive | 1583171 - 1584610 | 53646.2 |
| duf4955 domain-containing protein | FBD94_05875 | Not Available | Positive | 1584627 - 1586132 | 55923.1 |
| hypothetical protein | FBD94_05880 | Not Available | Positive | 1586266 - 1587684 | 52592.9 |
| sigma-70 family rna polymerase sigma factor | FBD94_05885 | Not Available | Positive | 1587749 - 1588312 | 21654.7 |
| hypothetical protein | FBD94_05890 | Not Available | Positive | 1588293 - 1588562 | 10891.2 |
| atp-dependent clp protease proteolytic subunit | FBD94_05895 | Not Available | Positive | 1588646 - 1589326 | 25057.2 |
| hypothetical protein | FBD94_05900 | Not Available | Negative | 1589329 - 1590837 | 55028.3 |
| cadmium-translocating p-type atpase | FBD94_05905 | Not Available | Negative | 1590930 - 1592918 | 71685.5 |
| transcriptional repressor | FBD94_05910 | Not Available | Negative | 1592954 - 1593376 | 15734.9 |
| efflux rnd transporter periplasmic adaptor subunit | FBD94_05915 | Not Available | Negative | 1593398 - 1594693 | 46640.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

