Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4959 domain-containing protein | FBD94_05820 | Not Available | Positive | 1565018 - 1566250 | 46071.1 |
| hypothetical protein | FBD94_05825 | Not Available | Positive | 1566278 - 1567522 | 46017.7 |
| helix-turn-helix domain-containing protein | FBD94_05830 | Not Available | Positive | 1567918 - 1568796 | 33693.6 |
| glycoside hydrolase family 2 protein | FBD94_05835 | Not Available | Positive | 1568972 - 1571434 | 92992.5 |
| glycoside hydrolase family 95 protein | FBD94_05840 | Not Available | Positive | 1571445 - 1573922 | 91975.6 |
| glycoside hydrolase family 95 protein | FBD94_05845 | Not Available | Positive | 1573924 - 1576521 | 95475.6 |
| duf5110 domain-containing protein | FBD94_05850 | Not Available | Positive | 1576535 - 1578682 | 80673.1 |
| alginate lyase | FBD94_05855 | Not Available | Positive | 1578731 - 1579879 | 43629.3 |
| alpha-l-fucosidase | FBD94_05860 | Not Available | Positive | 1579867 - 1581747 | 69735.0 |
| glucuronyl hydrolase | FBD94_05865 | Not Available | Positive | 1581924 - 1583075 | 43560.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

