Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trehalose hydrolase | FBD94_05770 | Not Available | Positive | 1544268 - 1546556 | 85631.3 |
| alpha-l-fucosidase | FBD94_05775 | Not Available | Positive | 1546580 - 1548373 | 67636.4 |
| rok family protein | FBD94_05780 | Not Available | Positive | 1548550 - 1549734 | 42437.9 |
| susc/raga family tonb-linked outer membrane protein | FBD94_05785 | Not Available | Positive | 1549788 - 1552916 | 112906.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | FBD94_05790 | Not Available | Positive | 1552936 - 1554837 | 70594.1 |
| glycoside hydrolase family 92 protein | FBD94_05795 | Not Available | Positive | 1554909 - 1557116 | 82042.5 |
| sigma-70 family rna polymerase sigma factor | FBD94_05800 | Not Available | Positive | 1557294 - 1557887 | 23226.2 |
| duf4974 domain-containing protein | FBD94_05805 | Not Available | Positive | 1558199 - 1559497 | 49097.7 |
| tonb-dependent receptor | FBD94_05810 | Not Available | Positive | 1559618 - 1563064 | 128955.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_05815 | Not Available | Positive | 1563076 - 1564998 | 73666.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

