Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | FBD94_05670 | Not Available | Positive | 1511855 - 1513297 | 52895.9 |
| ahpc/tsa family protein | FBD94_05675 | Not Available | Positive | 1513382 - 1514581 | 43957.7 |
| ahpc/tsa family protein | FBD94_05680 | Not Available | Positive | 1514599 - 1515675 | 40212.3 |
| ahpc/tsa family protein | FBD94_05685 | Not Available | Positive | 1515680 - 1516780 | 41499.8 |
| sodium/solute symporter | FBD94_05690 | Not Available | Negative | 1516876 - 1518561 | 61039.2 |
| l-arabinose isomerase | FBD94_05695 | Not Available | Negative | 1518580 - 1520070 | 55174.9 |
| l-ribulose-5-phosphate 4-epimerase | FBD94_05700 | Not Available | Negative | 1520098 - 1520796 | 25913.8 |
| ribulokinase | FBD94_05705 | Not Available | Negative | 1520802 - 1522481 | 60856.8 |
| nudix hydrolase | FBD94_05710 | Not Available | Negative | 1522570 - 1523280 | 27417.3 |
| galactose mutarotase | FBD94_05715 | Not Available | Positive | 1523403 - 1524578 | 42681.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

