Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | FBD94_05470 | Not Available | Positive | 1454856 - 1456361 | 55593.8 |
| hypothetical protein | FBD94_05475 | Not Available | Positive | 1456370 - 1457275 | 33770.6 |
| tlpa family protein disulfide reductase | FBD94_05480 | Not Available | Positive | 1457293 - 1458438 | 44262.7 |
| peptidase s8 | FBD94_05485 | Not Available | Positive | 1458467 - 1460119 | 60306.0 |
| hypothetical protein | FBD94_05490 | Not Available | Positive | 1460123 - 1461340 | 44878.8 |
| nad(p)/fad-dependent oxidoreductase | FBD94_05495 | Not Available | Positive | 1461421 - 1462326 | 32682.1 |
| rna polymerase sigma-70 factor | FBD94_05500 | Not Available | Positive | 1462454 - 1463053 | 23503.4 |
| duf4974 domain-containing protein | FBD94_05505 | Not Available | Positive | 1463119 - 1464297 | 43732.4 |
| susc/raga family tonb-linked outer membrane protein | FBD94_05510 | Not Available | Positive | 1464482 - 1468078 | 135062.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_05515 | Not Available | Positive | 1468096 - 1469508 | 52437.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

