Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | FBD94_00470 | Not Available | Negative | 109258 - 110121 | 33119.2 |
| acetate--coa ligase | FBD94_00475 | Not Available | Positive | 110390 - 112288 | 70529.5 |
| hypothetical protein | FBD94_00480 | Not Available | Negative | 112317 - 114728 | 90004.1 |
| insulinase family protein | FBD94_00485 | Not Available | Negative | 114816 - 117749 | 109961.0 |
| 5'/3'-nucleotidase sure | FBD94_00490 | Not Available | Positive | 117920 - 118741 | 29689.4 |
| stationary phase survival protein sure | FBD94_00495 | Not Available | Positive | 118744 - 119025 | 10388.2 |
| lipid-a-disaccharide synthase | FBD94_00500 | Not Available | Positive | 119025 - 120140 | 41519.7 |
| acyl-coa thioesterase | FBD94_00505 | Not Available | Negative | 120084 - 120653 | 21134.4 |
| type ii toxin-antitoxin system hicb family antitoxin | FBD94_00515 | Not Available | Negative | 122343 - 122711 | 13866.5 |
| tonb-dependent receptor | FBD94_00520 | Not Available | Positive | 122910 - 125309 | 87972.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

