Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium/solute symporter | FBD94_05420 | Not Available | Positive | 1439585 - 1441162 | 57953.7 |
| alpha-rhamnosidase | FBD94_05425 | Not Available | Positive | 1441188 - 1443380 | 83284.9 |
| hypothetical protein | FBD94_05430 | Not Available | Negative | 1443466 - 1444428 | 35958.4 |
| hypothetical protein | FBD94_05435 | Not Available | Negative | 1444536 - 1445165 | 22306.4 |
| hypothetical protein | FBD94_05440 | Not Available | Negative | 1445215 - 1446159 | 34734.3 |
| pdz domain-containing protein | FBD94_05445 | Not Available | Positive | 1446613 - 1448946 | 87711.2 |
| duf1622 domain-containing protein | FBD94_05450 | Not Available | Negative | 1448953 - 1449306 | 12926.9 |
| sigma-70 family rna polymerase sigma factor | FBD94_05455 | Not Available | Positive | 1449440 - 1450003 | 21744.5 |
| duf4974 domain-containing protein | FBD94_05460 | Not Available | Positive | 1450058 - 1451230 | 44096.6 |
| susc/raga family tonb-linked outer membrane protein | FBD94_05465 | Not Available | Positive | 1451267 - 1454845 | 131879.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

