Pedobacter hiemivivus

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter hiemivivus is a bacterium characterized by the presence of flagella, which indicates its capability for motility. This motility can be an important trait for its ecological interactions, potentially aiding in its movement within various environments. The organism possesses two replicons, suggesting a complex genomic structure that may contribute to its adaptability and survival in diverse conditions. The type strains of Pedobacter hiemivivus are cataloged under the accessions SJSM00000000.1 and SWDX00000000.1, which provide a basis for further genetic and functional studies of this species. These accessions are essential for researchers looking to explore the genomic features and biochemical pathways of P. hiemivivus, which may reveal insights into its ecological roles and interactions. In terms of ecological significance, the flagellated nature of Pedobacter hiemivivus could imply a degree of environmental resilience, allowing it to navigate through different substrates or microenvironments. This ability to move could enhance its nutrient acquisition and influence its interactions with other microbial communities. Overall, the traits of Pedobacter hiemivivus highlight its potential importance in the microbial ecosystems it inhabits, particularly in terms of mobility and adaptability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter hiemivivus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter hiemivivus strain RP-1-16 contig36, whole genome

Gene Summary

Adenine Count

1965080 bp

Thymine Count

1938424 bp

Guanine Count

1297924 bp

Cytosine Count

1239067 bp

Genome Length

6440511 bp

Protein-coding Genes

5065 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
six-hairpin glycosidaseFBD94_05370Not AvailablePositive1422726 - 142457069358.6
sialate o-acetylesteraseFBD94_05375Not AvailablePositive1424582 - 142604854312.8
glycoside hydrolase family 2FBD94_05380Not AvailablePositive1426065 - 1428821104245.0
alpha-rhamnosidaseFBD94_05385Not AvailablePositive1428855 - 1431596102762.0
duf3826 domain-containing proteinFBD94_05390Not AvailablePositive1431633 - 143228323893.9
sialidaseFBD94_05395Not AvailablePositive1432309 - 143344241574.0
acetylxylan esteraseFBD94_05400Not AvailablePositive1433447 - 143485052421.3
sugar phosphate isomerase/epimeraseFBD94_05405Not AvailablePositive1434855 - 143575133390.9
l-rhamnose mutarotaseFBD94_05410Not AvailablePositive1435758 - 143830195061.8
gfo/idh/moca family oxidoreductaseFBD94_05415Not AvailablePositive1438464 - 143954940902.5

Displaying genes 1071 – 1080 of 10481 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.