Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | FBD94_05320 | Not Available | Positive | 1404422 - 1406299 | 69689.7 |
| hypothetical protein | FBD94_05325 | Not Available | Positive | 1406339 - 1407301 | 35412.0 |
| tonb-dependent receptor | FBD94_05330 | Not Available | Positive | 1407749 - 1410835 | 112123.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_05335 | Not Available | Positive | 1410848 - 1412632 | 66138.0 |
| port family protein | FBD94_05340 | Not Available | Positive | 1412828 - 1413445 | 22662.8 |
| polysaccharide lyase | FBD94_05345 | Not Available | Positive | 1413782 - 1415437 | 60882.4 |
| polysaccharide lyase | FBD94_05350 | Not Available | Positive | 1415442 - 1417070 | 59252.6 |
| pectate lyase | FBD94_05355 | Not Available | Positive | 1417164 - 1420280 | 115060.0 |
| duf4038 domain-containing protein | FBD94_05360 | Not Available | Positive | 1420294 - 1421703 | 53033.5 |
| arabinosidase | FBD94_05365 | Not Available | Positive | 1421703 - 1422665 | 36842.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

