Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar mfs transporter | FBD94_05270 | Not Available | Positive | 1384505 - 1385755 | 45666.7 |
| hypothetical protein | FBD94_05275 | Not Available | Negative | 1386020 - 1386580 | 21160.5 |
| hypothetical protein | FBD94_05280 | Not Available | Positive | 1386707 - 1389454 | 103309.0 |
| glycoside hydrolase | FBD94_05285 | Not Available | Positive | 1389454 - 1391007 | 59591.5 |
| glycoside hydrolase family 28 protein | FBD94_05290 | Not Available | Positive | 1391066 - 1392622 | 57119.2 |
| glycoside hydrolase family 95 protein | FBD94_05295 | Not Available | Positive | 1392648 - 1395461 | 103744.0 |
| duf4982 domain-containing protein | FBD94_05300 | Not Available | Positive | 1395439 - 1398981 | 133354.0 |
| helix-turn-helix domain-containing protein | FBD94_05305 | Not Available | Negative | 1398989 - 1399861 | 33730.9 |
| duf3826 domain-containing protein | FBD94_05310 | Not Available | Positive | 1400290 - 1400970 | 25678.6 |
| susc/raga family tonb-linked outer membrane protein | FBD94_05315 | Not Available | Positive | 1401268 - 1404411 | 115658.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

