Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1080 domain-containing protein | FBD94_05220 | Not Available | Positive | 1366039 - 1367010 | 35257.2 |
| aspartate ammonia-lyase | FBD94_05225 | Not Available | Positive | 1367130 - 1368539 | 51206.2 |
| heparinase | FBD94_05230 | Not Available | Negative | 1368716 - 1370695 | 75466.8 |
| glucuronyl hydrolase | FBD94_05235 | Not Available | Negative | 1370714 - 1371922 | 45714.3 |
| sulfatase | FBD94_05240 | Not Available | Positive | 1372194 - 1373834 | 63207.5 |
| sulfatase | FBD94_05245 | Not Available | Positive | 1373844 - 1375343 | 56551.6 |
| duf229 domain-containing protein | FBD94_05250 | Not Available | Positive | 1375346 - 1376740 | 51874.2 |
| duf4962 domain-containing protein | FBD94_05255 | Not Available | Positive | 1376744 - 1379386 | 99410.8 |
| response regulator | FBD94_05260 | Not Available | Positive | 1379402 - 1383469 | 154138.0 |
| rok family protein | FBD94_05265 | Not Available | Positive | 1383569 - 1384486 | 31965.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

