Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | FBD94_05070 | Not Available | Positive | 1329607 - 1331193 | 59055.4 |
| hypothetical protein | FBD94_05075 | Not Available | Positive | 1331364 - 1332011 | 24565.2 |
| n-acetylglucosamine-6-phosphate deacetylase | FBD94_05080 | Not Available | Positive | 1332042 - 1333238 | 43181.1 |
| glucosamine-6-phosphate deaminase | FBD94_05085 | Not Available | Positive | 1333256 - 1334011 | 28267.4 |
| phytanoyl-coa dioxygenase family protein | FBD94_05090 | Not Available | Positive | 1334051 - 1334866 | 30296.9 |
| sugar phosphate isomerase/epimerase | FBD94_05095 | Not Available | Positive | 1334870 - 1335703 | 32347.5 |
| glycoside hydrolase family 2 | FBD94_05100 | Not Available | Positive | 1335714 - 1338581 | 108704.0 |
| glycoside hydrolase | FBD94_05105 | Not Available | Positive | 1338595 - 1340058 | 54205.3 |
| glycoside hydrolase family 92 protein | FBD94_05110 | Not Available | Positive | 1340097 - 1342412 | 87138.9 |
| chondroitinase | FBD94_05115 | Not Available | Positive | 1342437 - 1344512 | 78004.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

