Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | FBD94_04970 | Not Available | Positive | 1304556 - 1305515 | 36026.3 |
| tonb-dependent receptor | FBD94_04975 | Not Available | Positive | 1305836 - 1308958 | 115650.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_04980 | Not Available | Positive | 1308994 - 1310883 | 72141.6 |
| duf4959 domain-containing protein | FBD94_04985 | Not Available | Positive | 1310933 - 1312126 | 44007.5 |
| hypothetical protein | FBD94_04990 | Not Available | Positive | 1312136 - 1313290 | 42463.4 |
| hypothetical protein | FBD94_04995 | Not Available | Positive | 1313309 - 1315090 | 66229.7 |
| dna alkylation repair protein | FBD94_05000 | Not Available | Positive | 1315209 - 1316291 | 41910.3 |
| hypothetical protein | FBD94_05005 | Not Available | Negative | 1316239 - 1316649 | 15694.7 |
| helix-turn-helix transcriptional regulator | FBD94_05010 | Not Available | Negative | 1316947 - 1317948 | 38580.0 |
| hypothetical protein | FBD94_05015 | Not Available | Negative | 1317967 - 1318167 | 7832.65 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

