Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s12 methylthiotransferase rimo | FBD94_00420 | Not Available | Negative | 98824 - 100158 | 50492.5 |
| signal recognition particle-docking protein ftsy | FBD94_00425 | Not Available | Negative | 100202 - 101164 | 34957.2 |
| duf4295 domain-containing protein | FBD94_00430 | Not Available | Negative | 101237 - 101392 | 5626.87 |
| 50s ribosomal protein l33 | FBD94_00435 | Not Available | Negative | 101433 - 101615 | 6984.71 |
| 50s ribosomal protein l28 | FBD94_00440 | Not Available | Negative | 101657 - 101890 | 8872.97 |
| duf4974 domain-containing protein | FBD94_00445 | Not Available | Positive | 102308 - 103594 | 47262.3 |
| susc/raga family tonb-linked outer membrane protein | FBD94_00450 | Not Available | Positive | 103594 - 106884 | 123007.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_00455 | Not Available | Positive | 106894 - 108267 | 52257.3 |
| hypothetical protein | FBD94_00460 | Not Available | Negative | 108311 - 108619 | 10848.7 |
| hypothetical protein | FBD94_00465 | Not Available | Negative | 108700 - 109155 | 16670.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

