Pedobacter psychroterrae

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter psychroterrae is a psychrophilic bacterium characterized by its ability to thrive in cold environments. One notable trait of this organism is the presence of flagella, which suggests that it has the capability for motility. This feature may play a significant role in its ecological interactions, allowing it to navigate its environment effectively, potentially aiding in nutrient acquisition or avoidance of harmful conditions. The genome of Pedobacter psychroterrae is comprised of a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in cold habitats. The accession number for its genomic data is SJSL00000000.1, which provides a reference point for researchers interested in further exploring its genetic makeup and the mechanisms that enable its survival in low-temperature conditions. Ecologically, Pedobacter psychroterrae is likely to be involved in nutrient cycling within its environment, particularly in cold ecosystems such as polar regions or deep-sea habitats. Its psychrophilic nature and motility can enhance its role in decomposing organic matter and participating in microbial communities that are crucial for maintaining ecosystem health. Understanding the traits of Pedobacter psychroterrae can provide insights into the adaptations of microorganisms in extreme environments and their contributions to ecological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter psychroterrae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter psychroterrae strain RP-1-14 contig15, whole genome

Gene Summary

Adenine Count

1484795 bp

Thymine Count

1488398 bp

Guanine Count

1086558 bp

Cytosine Count

1052445 bp

Genome Length

5112203 bp

Protein-coding Genes

4204 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent metallopeptidase ftsh/yme1/tma family proteinEZ437_03635Not AvailableNegative843720 - 84581077046.6
ribosome silencing factorEZ437_03640Not AvailableNegative845840 - 84621414227.7
biotin--[acetyl-coa-carboxylase] ligaseEZ437_03645Not AvailablePositive846256 - 84704429086.0
duf255 domain-containing proteinEZ437_03650Not AvailablePositive847146 - 84887362737.7
6-phosphofructokinaseEZ437_03655Not AvailablePositive848870 - 84985335216.5
5'(3')-deoxyribonucleotidaseEZ437_03660Not AvailableNegative849900 - 85041820410.3
30s ribosomal protein s16EZ437_03665Not AvailablePositive850578 - 85124923945.0
16s rrna processing protein rimmEZ437_03670Not AvailablePositive851359 - 85188620336.1
trna (guanosine(37)-n1)-methyltransferase trmdEZ437_03675Not AvailablePositive851897 - 85257424917.7
hypothetical proteinEZ437_03680Not AvailableNegative852571 - 85293013587.6

Displaying genes 731 – 740 of 4251 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.