Pedobacter psychroterrae

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter psychroterrae is a psychrophilic bacterium characterized by its ability to thrive in cold environments. One notable trait of this organism is the presence of flagella, which suggests that it has the capability for motility. This feature may play a significant role in its ecological interactions, allowing it to navigate its environment effectively, potentially aiding in nutrient acquisition or avoidance of harmful conditions. The genome of Pedobacter psychroterrae is comprised of a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in cold habitats. The accession number for its genomic data is SJSL00000000.1, which provides a reference point for researchers interested in further exploring its genetic makeup and the mechanisms that enable its survival in low-temperature conditions. Ecologically, Pedobacter psychroterrae is likely to be involved in nutrient cycling within its environment, particularly in cold ecosystems such as polar regions or deep-sea habitats. Its psychrophilic nature and motility can enhance its role in decomposing organic matter and participating in microbial communities that are crucial for maintaining ecosystem health. Understanding the traits of Pedobacter psychroterrae can provide insights into the adaptations of microorganisms in extreme environments and their contributions to ecological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter psychroterrae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter psychroterrae strain RP-1-14 contig15, whole genome

Gene Summary

Adenine Count

1484795 bp

Thymine Count

1488398 bp

Guanine Count

1086558 bp

Cytosine Count

1052445 bp

Genome Length

5112203 bp

Protein-coding Genes

4204 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yjgp/yjgq family permeaseEZ437_19170Not AvailablePositive4549499 - 455093254127.7
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase iiEZ437_19175Not AvailablePositive4551082 - 455229344223.4
translocation/assembly module tambEZ437_19180Not AvailableNegative4552302 - 4556729164133.0
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadEZ437_19185Not AvailablePositive4556786 - 455778736239.7
hypothetical proteinEZ437_19190Not AvailablePositive4557802 - 45580238442.93
recombinase recaEZ437_19195Not AvailableNegative4558068 - 455908136222.8
endonuclease iiiEZ437_19200Not AvailableNegative4559177 - 455986025789.4
hypothetical proteinEZ437_19205Not AvailableNegative4559934 - 45601257165.34
sigma-70 family rna polymerase sigma factorEZ437_19210Not AvailableNegative4560235 - 456081022501.3
excinuclease abc subunit uvraEZ437_19215Not AvailablePositive4561078 - 4563882104020.0

Displaying genes 3801 – 3810 of 4251 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.