Pedobacter psychroterrae

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter psychroterrae is a psychrophilic bacterium characterized by its ability to thrive in cold environments. One notable trait of this organism is the presence of flagella, which suggests that it has the capability for motility. This feature may play a significant role in its ecological interactions, allowing it to navigate its environment effectively, potentially aiding in nutrient acquisition or avoidance of harmful conditions. The genome of Pedobacter psychroterrae is comprised of a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in cold habitats. The accession number for its genomic data is SJSL00000000.1, which provides a reference point for researchers interested in further exploring its genetic makeup and the mechanisms that enable its survival in low-temperature conditions. Ecologically, Pedobacter psychroterrae is likely to be involved in nutrient cycling within its environment, particularly in cold ecosystems such as polar regions or deep-sea habitats. Its psychrophilic nature and motility can enhance its role in decomposing organic matter and participating in microbial communities that are crucial for maintaining ecosystem health. Understanding the traits of Pedobacter psychroterrae can provide insights into the adaptations of microorganisms in extreme environments and their contributions to ecological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter psychroterrae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter psychroterrae strain RP-1-14 contig15, whole genome

Gene Summary

Adenine Count

1484795 bp

Thymine Count

1488398 bp

Guanine Count

1086558 bp

Cytosine Count

1052445 bp

Genome Length

5112203 bp

Protein-coding Genes

4204 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
luxr family transcriptional regulatorEZ437_17540Not AvailableNegative4120427 - 412103823620.2
hypothetical proteinEZ437_17545Not AvailableNegative4121305 - 41215358278.93
hypothetical proteinEZ437_17550Not AvailablePositive4121778 - 412343662173.1
glycoside hydrolase family 28 proteinEZ437_17555Not AvailableNegative4123477 - 412489551171.7
glycoside hydrolase family 92 proteinEZ437_17560Not AvailableNegative4124986 - 412728686880.9
laci family transcriptional regulatorEZ437_17565Not AvailableNegative4127402 - 412841837580.8
hypothetical proteinEZ437_17570Not AvailablePositive4128571 - 41287235962.95
tonb-dependent receptorEZ437_17575Not AvailablePositive4128810 - 4131851110875.0
ragb/susd family nutrient uptake outer membrane proteinEZ437_17580Not AvailablePositive4131864 - 413346560070.0
duf5009 domain-containing proteinEZ437_17585Not AvailablePositive4133566 - 413475644461.3

Displaying genes 3481 – 3490 of 4251 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.