Pedobacter psychroterrae

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter psychroterrae is a psychrophilic bacterium characterized by its ability to thrive in cold environments. One notable trait of this organism is the presence of flagella, which suggests that it has the capability for motility. This feature may play a significant role in its ecological interactions, allowing it to navigate its environment effectively, potentially aiding in nutrient acquisition or avoidance of harmful conditions. The genome of Pedobacter psychroterrae is comprised of a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in cold habitats. The accession number for its genomic data is SJSL00000000.1, which provides a reference point for researchers interested in further exploring its genetic makeup and the mechanisms that enable its survival in low-temperature conditions. Ecologically, Pedobacter psychroterrae is likely to be involved in nutrient cycling within its environment, particularly in cold ecosystems such as polar regions or deep-sea habitats. Its psychrophilic nature and motility can enhance its role in decomposing organic matter and participating in microbial communities that are crucial for maintaining ecosystem health. Understanding the traits of Pedobacter psychroterrae can provide insights into the adaptations of microorganisms in extreme environments and their contributions to ecological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter psychroterrae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter psychroterrae strain RP-1-14 contig15, whole genome

Gene Summary

Adenine Count

1484795 bp

Thymine Count

1488398 bp

Guanine Count

1086558 bp

Cytosine Count

1052445 bp

Genome Length

5112203 bp

Protein-coding Genes

4204 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
response regulator transcription factorEZ437_15930Not AvailableNegative3741461 - 374219527648.4
ghkl domain-containing proteinEZ437_15935Not AvailableNegative3742200 - 374324339283.2
hypothetical proteinEZ437_15940Not AvailablePositive3743485 - 374570483213.4
sugar phosphate isomerase/epimeraseEZ437_15945Not AvailableNegative3745716 - 374666935027.5
mfs transporterEZ437_15950Not AvailableNegative3746742 - 374797744702.6
pas domain s-box proteinEZ437_15955Not AvailableNegative3748006 - 375013279597.0
cdgsh iron-sulfur domain-containing proteinEZ437_15960Not AvailablePositive3750289 - 37505138147.68
degt/dnrj/eryc1/strs aminotransferase family proteinEZ437_15965Not AvailablePositive3750541 - 375167441558.4
mfs transporterEZ437_15970Not AvailablePositive3751756 - 375296144185.5
duf1801 domain-containing proteinEZ437_15975Not AvailablePositive3752993 - 375341515369.5

Displaying genes 3161 – 3170 of 4251 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.