Pedobacter psychroterrae

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter psychroterrae is a psychrophilic bacterium characterized by its ability to thrive in cold environments. One notable trait of this organism is the presence of flagella, which suggests that it has the capability for motility. This feature may play a significant role in its ecological interactions, allowing it to navigate its environment effectively, potentially aiding in nutrient acquisition or avoidance of harmful conditions. The genome of Pedobacter psychroterrae is comprised of a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in cold habitats. The accession number for its genomic data is SJSL00000000.1, which provides a reference point for researchers interested in further exploring its genetic makeup and the mechanisms that enable its survival in low-temperature conditions. Ecologically, Pedobacter psychroterrae is likely to be involved in nutrient cycling within its environment, particularly in cold ecosystems such as polar regions or deep-sea habitats. Its psychrophilic nature and motility can enhance its role in decomposing organic matter and participating in microbial communities that are crucial for maintaining ecosystem health. Understanding the traits of Pedobacter psychroterrae can provide insights into the adaptations of microorganisms in extreme environments and their contributions to ecological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter psychroterrae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter psychroterrae strain RP-1-14 contig15, whole genome

Gene Summary

Adenine Count

1484795 bp

Thymine Count

1488398 bp

Guanine Count

1086558 bp

Cytosine Count

1052445 bp

Genome Length

5112203 bp

Protein-coding Genes

4204 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinEZ437_11280Not AvailablePositive2584089 - 258563358554.6
atp/gtp-binding proteinEZ437_11285Not AvailablePositive2585649 - 258684244337.8
duf5007 domain-containing proteinEZ437_11290Not AvailablePositive2586869 - 258796341199.1
susc/raga family tonb-linked outer membrane proteinEZ437_11295Not AvailablePositive2587989 - 2591186117447.0
ragb/susd family nutrient uptake outer membrane proteinEZ437_11300Not AvailablePositive2591210 - 259283561385.5
hypothetical proteinEZ437_11305Not AvailablePositive2592856 - 259362028539.4
duf5008 domain-containing proteinEZ437_11310Not AvailablePositive2593640 - 259523257622.9
duf4983 domain-containing proteinEZ437_11315Not AvailablePositive2595236 - 259708067678.6
carbohydrate-binding proteinEZ437_11320Not AvailablePositive2597151 - 259860852089.1
duf5013 domain-containing proteinEZ437_11325Not AvailablePositive2598663 - 259976640549.1

Displaying genes 2241 – 2250 of 4251 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.