Odoribacter sp. AF21-41

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Odoribacteraceae

Genus

Odoribacter

Description

Odoribacter sp. AF21-41 is a Gram-negative bacterium characterized by having a single replicon. The genomic information for this strain is available under the accession number QTWN00000000.1. The Gram-negative classification indicates that Odoribacter sp. AF21-41 possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. This structural feature often contributes to the organism's resilience in various environments and can influence its interactions with other microorganisms and host organisms. The presence of only one replicon suggests a streamlined genomic organization, which may be advantageous for efficiency in replication and gene expression. Such a trait can indicate a specialization in certain ecological niches or metabolic pathways, although specific metabolic capabilities or ecological roles of Odoribacter sp. AF21-41 are not detailed in the provided information. In summary, Odoribacter sp. AF21-41's classification as a Gram-negative bacterium with a single replicon can provide insights into its potential adaptability and ecological interactions. Understanding these traits could facilitate further studies on its role within microbial communities and its contributions to broader ecological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyOdoribacteraceae
GenusOdoribacter
SpeciesOdoribacter sp. AF21-41
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Odoribacter sp. AF21-41 AF21-41.Scaf49, whole genome shotgun

Gene Summary

Adenine Count

1553139 bp

Thymine Count

1558919 bp

Guanine Count

1171922 bp

Cytosine Count

1165135 bp

Genome Length

5449445 bp

Protein-coding Genes

4295 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yjgp/yjgq family permeaseDWX82_12390Not AvailableNegative3084489 - 308556841350.8
trna guanosine(34) transglycosylase tgtDWX82_12395Not AvailableNegative3085592 - 308672242596.3
s9 family peptidaseDWX82_12400Not AvailablePositive3086837 - 308904184146.9
aminoacyl-histidine dipeptidaseDWX82_12405Not AvailablePositive3089298 - 309076153267.9
long-chain fatty acid--coa ligaseDWX82_12410Not AvailablePositive3091150 - 309282662839.6
fumarylacetoacetate hydrolaseDWX82_12415Not AvailableNegative3092870 - 309344521263.6
nitroreductaseDWX82_12420Not AvailableNegative3093483 - 309404921344.9
pd-(d/e)xk nuclease family proteinDWX82_12425Not AvailablePositive3094114 - 3096945109737.0
shikimate kinaseDWX82_12430Not AvailableNegative3097137 - 309756816559.6
dna gyrase/topoisomerase iv subunit aDWX82_12435Not AvailableNegative3097611 - 310024199979.4

Displaying genes 2461 – 2470 of 4380 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.