Odoribacter sp. AF21-41

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Odoribacteraceae

Genus

Odoribacter

Description

Odoribacter sp. AF21-41 is a Gram-negative bacterium characterized by having a single replicon. The genomic information for this strain is available under the accession number QTWN00000000.1. The Gram-negative classification indicates that Odoribacter sp. AF21-41 possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. This structural feature often contributes to the organism's resilience in various environments and can influence its interactions with other microorganisms and host organisms. The presence of only one replicon suggests a streamlined genomic organization, which may be advantageous for efficiency in replication and gene expression. Such a trait can indicate a specialization in certain ecological niches or metabolic pathways, although specific metabolic capabilities or ecological roles of Odoribacter sp. AF21-41 are not detailed in the provided information. In summary, Odoribacter sp. AF21-41's classification as a Gram-negative bacterium with a single replicon can provide insights into its potential adaptability and ecological interactions. Understanding these traits could facilitate further studies on its role within microbial communities and its contributions to broader ecological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyOdoribacteraceae
GenusOdoribacter
SpeciesOdoribacter sp. AF21-41
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Odoribacter sp. AF21-41 AF21-41.Scaf49, whole genome shotgun

Gene Summary

Adenine Count

1553139 bp

Thymine Count

1558919 bp

Guanine Count

1171922 bp

Cytosine Count

1165135 bp

Genome Length

5449445 bp

Protein-coding Genes

4295 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
large-conductance mechanosensitive channel protein msclDWX82_12035Not AvailablePositive3000161 - 300058915529.5
pyruvate kinaseDWX82_12040Not AvailableNegative3000655 - 300205552126.3
type ii 3-dehydroquinate dehydrataseDWX82_12045Not AvailableNegative3002139 - 300255215267.4
site-specific tyrosine recombinase xerdDWX82_12050Not AvailablePositive3002806 - 300372034413.6
hypothetical proteinDWX82_12055Not AvailablePositive3003778 - 300434721437.2
trna (adenosine(37)-n6)-dimethylallyltransferase miaaDWX82_12060Not AvailableNegative3004478 - 300539235277.6
n-acetyltransferaseDWX82_12065Not AvailablePositive3005566 - 300608720374.4
hypothetical proteinDWX82_12070Not AvailablePositive3006143 - 300813475564.1
atp-dependent clp protease atp-binding subunitDWX82_12075Not AvailableNegative3008211 - 301071594022.0
nad-dependent dna ligase ligaDWX82_12080Not AvailableNegative3010839 - 301334394758.5

Displaying genes 2391 – 2400 of 4380 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.