Pedobacter miscanthi

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter miscanthi is a species of bacteria characterized by the presence of flagella, which facilitates its motility in various environments. The organism has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival. The genomic information for Pedobacter miscanthi is cataloged under the accession number QNQU00000000.1, allowing for further investigation and analysis of its genetic makeup. This species belongs to the genus Pedobacter, which is known for its versatility in different ecological niches, often found in soil and plant-associated environments. The flagella enable Pedobacter miscanthi to navigate through its surroundings, potentially assisting in its role within the microbial community. The presence of flagella suggests an advantage in accessing nutrients or evading unfavorable conditions. In terms of ecological insight, the motility of Pedobacter miscanthi may play a significant role in its interactions with plant hosts and its contribution to soil health. As a member of the diverse microbial community, it may participate in nutrient cycling or assist in the degradation of organic matter, thus influencing the dynamics of the ecosystems it inhabits. Overall, the traits of Pedobacter miscanthi highlight its adaptability and ecological importance in various environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter miscanthi
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter miscanthi strain RS10 Scaffold100, whole genome shotgun

Gene Summary

Adenine Count

2015890 bp

Thymine Count

2019062 bp

Guanine Count

1320136 bp

Cytosine Count

1341798 bp

Genome Length

6696979 bp

Protein-coding Genes

5574 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxythreonine-4-phosphate dehydrogenase pdxaDRW42_04480Not AvailableNegative1046589 - 104766839313.9
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferaseDRW42_04485Not AvailablePositive1047862 - 104864729780.3
thioredoxin family proteinDRW42_04490Not AvailablePositive1048977 - 104958222589.5
atp-dependent clp protease adaptor clpsDRW42_04495Not AvailableNegative1049717 - 104999810950.0
3-oxoacyl-acp synthaseDRW42_04500Not AvailablePositive1050171 - 105121738216.6
hypothetical proteinDRW42_04510Not AvailableNegative1051508 - 105395894058.7
hypothetical proteinDRW42_04515Not AvailableNegative1053924 - 105494939526.0
d-tyrosyl-trna(tyr) deacylaseDRW42_04520Not AvailablePositive1054979 - 105543116168.9
glycosyl transferaseDRW42_04525Not AvailablePositive1055523 - 105706458965.7
hypothetical proteinDRW42_04530Not AvailablePositive1057178 - 105836545658.1

Displaying genes 891 – 900 of 5630 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.