Pedobacter miscanthi

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter miscanthi is a species of bacteria characterized by the presence of flagella, which facilitates its motility in various environments. The organism has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival. The genomic information for Pedobacter miscanthi is cataloged under the accession number QNQU00000000.1, allowing for further investigation and analysis of its genetic makeup. This species belongs to the genus Pedobacter, which is known for its versatility in different ecological niches, often found in soil and plant-associated environments. The flagella enable Pedobacter miscanthi to navigate through its surroundings, potentially assisting in its role within the microbial community. The presence of flagella suggests an advantage in accessing nutrients or evading unfavorable conditions. In terms of ecological insight, the motility of Pedobacter miscanthi may play a significant role in its interactions with plant hosts and its contribution to soil health. As a member of the diverse microbial community, it may participate in nutrient cycling or assist in the degradation of organic matter, thus influencing the dynamics of the ecosystems it inhabits. Overall, the traits of Pedobacter miscanthi highlight its adaptability and ecological importance in various environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter miscanthi
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter miscanthi strain RS10 Scaffold100, whole genome shotgun

Gene Summary

Adenine Count

2015890 bp

Thymine Count

2019062 bp

Guanine Count

1320136 bp

Cytosine Count

1341798 bp

Genome Length

6696979 bp

Protein-coding Genes

5574 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate aminotransferase family proteinDRW42_04275Not AvailablePositive1004333 - 100546341123.3
acetylornithine carbamoyltransferaseDRW42_04280Not AvailablePositive1005635 - 100660936573.8
duf1016 domain-containing proteinDRW42_04285Not AvailablePositive1006620 - 100767240913.4
acetylglutamate kinaseDRW42_04290Not AvailablePositive1007662 - 100849829394.6
pyrroline-5-carboxylate reductaseDRW42_04295Not AvailablePositive1008690 - 100950228178.3
acetylornithine deacetylaseDRW42_04300Not AvailablePositive1009613 - 101067739143.6
hypothetical proteinDRW42_04305Not AvailablePositive1010887 - 10111479986.86
hypothetical proteinDRW42_04310Not AvailablePositive1011461 - 10116828367.98
hypothetical proteinDRW42_04315Not AvailablePositive1011682 - 101201412905.4
argininosuccinate lyaseDRW42_04320Not AvailablePositive1012109 - 101344049704.9

Displaying genes 851 – 860 of 5630 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.