Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter miscanthi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2015890 bp
Thymine Count
2019062 bp
Guanine Count
1320136 bp
Cytosine Count
1341798 bp
Genome Length
6696979 bp
Protein-coding Genes
5574 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit alpha | DRW42_03715 | Not Available | Negative | 870246 - 873260 | 116480.0 |
| dna polymerase iv | DRW42_03720 | Not Available | Negative | 873260 - 874582 | 49646.6 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | DRW42_03725 | Not Available | Negative | 875427 - 876482 | 39369.1 |
| 23s rrna pseudouridine(2604) synthase rluf | DRW42_03730 | Not Available | Negative | 876572 - 877546 | 36164.3 |
| flavoprotein | DRW42_03735 | Not Available | Negative | 877574 - 878038 | 16637.0 |
| dinb family protein | DRW42_03740 | Not Available | Negative | 878216 - 878776 | 21118.3 |
| yafy family transcriptional regulator | DRW42_03745 | Not Available | Negative | 879064 - 879753 | 26879.7 |
| hybrid sensor histidine kinase/response regulator | DRW42_03750 | Not Available | Positive | 879894 - 882371 | 93715.5 |
| sigma-54-dependent fis family transcriptional regulator | DRW42_03755 | Not Available | Negative | 882416 - 883747 | 49384.5 |
| hypothetical protein | DRW42_03760 | Not Available | Negative | 883817 - 884131 | 11193.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

