Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter miscanthi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2015890 bp
Thymine Count
2019062 bp
Guanine Count
1320136 bp
Cytosine Count
1341798 bp
Genome Length
6696979 bp
Protein-coding Genes
5574 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3307 domain-containing protein | DRW42_22855 | Not Available | Negative | 5318693 - 5319403 | 26900.9 |
| transcriptional regulator | DRW42_22860 | Not Available | Negative | 5319403 - 5320014 | 22366.2 |
| ligase-associated dna damage response exonuclease | DRW42_22865 | Not Available | Positive | 5320170 - 5321198 | 38488.7 |
| atp-dependent dna ligase | DRW42_22870 | Not Available | Positive | 5321201 - 5322790 | 61176.2 |
| ligase-associated dna damage response dexh box helicase | DRW42_22875 | Not Available | Positive | 5322879 - 5325353 | 93624.6 |
| ligase-associated dna damage response endonuclease pdem | DRW42_22880 | Not Available | Positive | 5325427 - 5326065 | 24135.2 |
| thioredoxin | DRW42_22885 | Not Available | Negative | 5326068 - 5326364 | 10846.4 |
| hypothetical protein | DRW42_22890 | Not Available | Negative | 5326476 - 5327090 | 23215.7 |
| 2-oxo acid dehydrogenase subunit e2 | DRW42_22895 | Not Available | Negative | 5327162 - 5328514 | 48680.6 |
| competence/damage-inducible protein a | DRW42_22900 | Not Available | Negative | 5328571 - 5329815 | 45501.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

