Pedobacter miscanthi

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter miscanthi is a species of bacteria characterized by the presence of flagella, which facilitates its motility in various environments. The organism has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival. The genomic information for Pedobacter miscanthi is cataloged under the accession number QNQU00000000.1, allowing for further investigation and analysis of its genetic makeup. This species belongs to the genus Pedobacter, which is known for its versatility in different ecological niches, often found in soil and plant-associated environments. The flagella enable Pedobacter miscanthi to navigate through its surroundings, potentially assisting in its role within the microbial community. The presence of flagella suggests an advantage in accessing nutrients or evading unfavorable conditions. In terms of ecological insight, the motility of Pedobacter miscanthi may play a significant role in its interactions with plant hosts and its contribution to soil health. As a member of the diverse microbial community, it may participate in nutrient cycling or assist in the degradation of organic matter, thus influencing the dynamics of the ecosystems it inhabits. Overall, the traits of Pedobacter miscanthi highlight its adaptability and ecological importance in various environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter miscanthi
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter miscanthi strain RS10 Scaffold100, whole genome shotgun

Gene Summary

Adenine Count

2015890 bp

Thymine Count

2019062 bp

Guanine Count

1320136 bp

Cytosine Count

1341798 bp

Genome Length

6696979 bp

Protein-coding Genes

5574 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDRW42_22095Not AvailableNegative5140090 - 514074624621.6
yqge/algh family proteinDRW42_22100Not AvailableNegative5140864 - 514142721230.1
pyridoxamine 5'-phosphate oxidaseDRW42_22105Not AvailablePositive5141474 - 514212424862.6
hypothetical proteinDRW42_22110Not AvailableNegative5142825 - 514375132069.1
susd/ragb family nutrient-binding outer membrane lipoproteinDRW42_22115Not AvailableNegative5143762 - 514537558309.2
susc/raga family tonb-linked outer membrane proteinDRW42_22120Not AvailableNegative5145375 - 5148485112645.0
3-hydroxybutyryl-coa dehydrogenaseDRW42_22125Not AvailablePositive5149046 - 514993932174.1
holliday junction branch migration dna helicase ruvbDRW42_22130Not AvailablePositive5149972 - 515099437630.2
carbon-nitrogen hydrolaseDRW42_22135Not AvailablePositive5151448 - 515295657632.2
hypothetical proteinDRW42_22140Not AvailableNegative5153017 - 51532237532.99

Displaying genes 4371 – 4380 of 5630 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.