Flavobacterium tibetense str. YH5

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium tibetense str. YH5 is a rod-shaped bacterium characterized by the presence of flagella, which may contribute to its motility. This species is part of the Flavobacteriaceae family and is noted for its unique genetic and physiological traits. The genome of F. tibetense str. YH5 contains a single replicon, suggesting a streamlined genomic structure that could be advantageous for its adaptation and survival in specific environments. The designation of the strain is supported by its genomic accession number QLST00000000.1, which provides a reference point for researchers interested in its genetic makeup. The availability of genomic data allows for further exploration of its metabolic capabilities and ecological roles. In ecological terms, members of the Flavobacterium genus are often found in aquatic environments, where they play crucial roles in the degradation of organic matter. The motility conferred by its flagella may enhance its ability to navigate through these environments, facilitating its interaction with organic substrates and other microorganisms. This adaptation is vital for nutrient cycling and maintaining ecosystem health, particularly in freshwater habitats. Overall, Flavobacterium tibetense str. YH5 exemplifies the diversity and ecological significance of bacteria within the Flavobacteriaceae family.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium tibetense
StrainYH5

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium tibetense str. YH5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium tibetense strain YH5 YH5_scaffold56, whole genome

Gene Summary

Adenine Count

913053 bp

Thymine Count

915343 bp

Guanine Count

456023 bp

Cytosine Count

453124 bp

Genome Length

2737708 bp

Protein-coding Genes

2534 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
enoyl-coa hydratase/isomerase family proteinDPN68_01855Not AvailableNegative387351 - 38810027101.7
phenylacetic acid degradation bifunctional protein paazDPN68_01860Not AvailableNegative388162 - 39065492625.8
3-oxoadipyl-coa thiolaseDPN68_01865Not AvailableNegative390702 - 39190442302.7
thioesteraseDPN68_01870Not AvailableNegative392131 - 39253815144.2
3-hydroxybutyryl-coa dehydrogenaseDPN68_01875Not AvailableNegative392598 - 39374642936.5
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomeraseDPN68_01880Not AvailableNegative393841 - 39462628476.3
phenylacetate-coa oxygenase subunit paajDPN68_01885Not AvailableNegative394685 - 39518518310.3
phenylacetate-coa oxygenase subunit paaiDPN68_01890Not AvailableNegative395255 - 39600728860.1
1,2-phenylacetyl-coa epoxidase subunit bDPN68_01895Not AvailableNegative396145 - 39642610774.7
1,2-phenylacetyl-coa epoxidase subunit aDPN68_01900Not AvailableNegative396495 - 39745136747.8

Displaying genes 381 – 390 of 2591 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.