Flavobacterium tibetense str. YH5

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium tibetense str. YH5 is a rod-shaped bacterium characterized by the presence of flagella, which may contribute to its motility. This species is part of the Flavobacteriaceae family and is noted for its unique genetic and physiological traits. The genome of F. tibetense str. YH5 contains a single replicon, suggesting a streamlined genomic structure that could be advantageous for its adaptation and survival in specific environments. The designation of the strain is supported by its genomic accession number QLST00000000.1, which provides a reference point for researchers interested in its genetic makeup. The availability of genomic data allows for further exploration of its metabolic capabilities and ecological roles. In ecological terms, members of the Flavobacterium genus are often found in aquatic environments, where they play crucial roles in the degradation of organic matter. The motility conferred by its flagella may enhance its ability to navigate through these environments, facilitating its interaction with organic substrates and other microorganisms. This adaptation is vital for nutrient cycling and maintaining ecosystem health, particularly in freshwater habitats. Overall, Flavobacterium tibetense str. YH5 exemplifies the diversity and ecological significance of bacteria within the Flavobacteriaceae family.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium tibetense
StrainYH5

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium tibetense str. YH5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium tibetense strain YH5 YH5_scaffold56, whole genome

Gene Summary

Adenine Count

913053 bp

Thymine Count

915343 bp

Guanine Count

456023 bp

Cytosine Count

453124 bp

Genome Length

2737708 bp

Protein-coding Genes

2534 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanine--d-alanine ligaseDPN68_11350Not AvailableNegative2367051 - 236809140347.9
hypothetical proteinDPN68_11355Not AvailableNegative2368088 - 236876525956.5
dinb family proteinDPN68_11360Not AvailableNegative2368753 - 236924419103.9
peptide-methionine (r)-s-oxide reductaseDPN68_11365Not AvailableNegative2369310 - 236978617957.5
duf4268 domain-containing proteinDPN68_11370Not AvailableNegative2369859 - 237030218117.4
coenzyme a pyrophosphataseDPN68_11375Not AvailablePositive2370372 - 237101324188.5
1-acyl-sn-glycerol-3-phosphate acyltransferaseDPN68_11380Not AvailablePositive2371093 - 237189631085.0
trab/gumn family proteinDPN68_11385Not AvailableNegative2371941 - 237279532191.5
hypothetical proteinDPN68_11390Not AvailableNegative2372798 - 237343925370.7
rna polymerase subunit sigma-70DPN68_11395Not AvailableNegative2373444 - 237393819271.0

Displaying genes 2261 – 2270 of 2591 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.