Pedobacter paludis

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter paludis is a species of bacteria characterized by its motility, attributed to the presence of flagella. This feature allows for movement within various environments, which may be significant for its ecological interactions. The organism has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in replication. The complete genomic data for Pedobacter paludis is accessible under the accession number QGNY00000000.1. This genomic information can provide insights into the metabolic pathways and ecological roles of the organism, although specific metabolic traits are not detailed here. In terms of ecological significance, the motility provided by flagella likely plays a crucial role in the survival and dispersal of Pedobacter paludis in its natural habitat. This could involve interactions with other microorganisms and participation in nutrient cycling within its ecosystem. Understanding such traits is essential for comprehending the role of Pedobacter paludis in environmental microbiology and its potential applications in bioremediation or other biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter paludis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter paludis strain R-8 contig61, whole genome shotgun

Gene Summary

Adenine Count

1583836 bp

Thymine Count

1566892 bp

Guanine Count

923446 bp

Cytosine Count

944055 bp

Genome Length

5018229 bp

Protein-coding Genes

4332 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxamine 5'-phosphate oxidaseDF947_03335Not AvailablePositive772514 - 77316425323.1
ragb/susd family nutrient uptake outer membrane proteinDF947_03340Not AvailableNegative773621 - 77522857236.3
hypothetical proteinDF947_03345Not AvailableNegative775240 - 778371112438.0
3-hydroxybutyryl-coa dehydrogenaseDF947_03350Not AvailablePositive778802 - 77969532198.2
holliday junction branch migration dna helicase ruvbDF947_03355Not AvailablePositive779727 - 78074937568.2
gxxexxy proteinDF947_03360Not AvailableNegative780900 - 78127714440.8
carbon-nitrogen hydrolaseDF947_03365Not AvailablePositive781419 - 78292757556.9
hypothetical proteinDF947_03370Not AvailableNegative782999 - 7832057536.05
trna epoxyqueuosine(34) reductase quegDF947_03375Not AvailablePositive783330 - 78426235412.1
hypothetical proteinDF947_03380Not AvailablePositive784290 - 7844937689.32

Displaying genes 671 – 680 of 4386 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.