Pedobacter paludis

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter paludis is a species of bacteria characterized by its motility, attributed to the presence of flagella. This feature allows for movement within various environments, which may be significant for its ecological interactions. The organism has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in replication. The complete genomic data for Pedobacter paludis is accessible under the accession number QGNY00000000.1. This genomic information can provide insights into the metabolic pathways and ecological roles of the organism, although specific metabolic traits are not detailed here. In terms of ecological significance, the motility provided by flagella likely plays a crucial role in the survival and dispersal of Pedobacter paludis in its natural habitat. This could involve interactions with other microorganisms and participation in nutrient cycling within its ecosystem. Understanding such traits is essential for comprehending the role of Pedobacter paludis in environmental microbiology and its potential applications in bioremediation or other biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter paludis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter paludis strain R-8 contig61, whole genome shotgun

Gene Summary

Adenine Count

1583836 bp

Thymine Count

1566892 bp

Guanine Count

923446 bp

Cytosine Count

944055 bp

Genome Length

5018229 bp

Protein-coding Genes

4332 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dead/deah box helicaseDF947_20930Not AvailableNegative4730368 - 473167248119.5
mfs transporterDF947_20935Not AvailableNegative4731883 - 473321748913.0
serine/threonine protein kinaseDF947_20940Not AvailableNegative4733465 - 473480248656.1
dna topoisomerase ivDF947_20945Not AvailablePositive4735166 - 473703471067.8
hypothetical proteinDF947_20950Not AvailablePositive4737075 - 473921680737.7
ribonuclease bnDF947_20955Not AvailableNegative4739303 - 474033137491.8
hypothetical proteinDF947_20960Not AvailableNegative4740339 - 474265187255.3
duf490 domain-containing proteinDF947_20965Not AvailableNegative4742635 - 4747629183392.0
cytidine deaminaseDF947_20970Not AvailablePositive4747777 - 474827417967.5
dna gyrase/topoisomerase iv subunit aDF947_20975Not AvailablePositive4748564 - 4751470109316.0

Displaying genes 4161 – 4170 of 4386 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.