Pedobacter paludis

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter paludis is a species of bacteria characterized by its motility, attributed to the presence of flagella. This feature allows for movement within various environments, which may be significant for its ecological interactions. The organism has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in replication. The complete genomic data for Pedobacter paludis is accessible under the accession number QGNY00000000.1. This genomic information can provide insights into the metabolic pathways and ecological roles of the organism, although specific metabolic traits are not detailed here. In terms of ecological significance, the motility provided by flagella likely plays a crucial role in the survival and dispersal of Pedobacter paludis in its natural habitat. This could involve interactions with other microorganisms and participation in nutrient cycling within its ecosystem. Understanding such traits is essential for comprehending the role of Pedobacter paludis in environmental microbiology and its potential applications in bioremediation or other biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter paludis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter paludis


Gene Summary

Adenine Count

1583836 bp

Thymine Count

1566892 bp

Guanine Count

923446 bp

Cytosine Count

944055 bp

Genome Length

5018229 bp

Protein-coding Genes

4332 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
anti-sigma factorDF947_00095Not AvailablePositive16450 - 1755940760.6
susc/raga family tonb-linked outer membrane proteinDF947_00100Not AvailablePositive17686 - 21015121804.0
ragb/susd family nutrient uptake outer membrane proteinDF947_00105Not AvailablePositive21027 - 2245452592.0
hypothetical proteinDF947_00110Not AvailablePositive22479 - 2374446457.9
gnat family n-acetyltransferaseDF947_00115Not AvailableNegative23894 - 2441218909.9
glyoxalaseDF947_00120Not AvailableNegative24484 - 2487314513.2
two-component system response regulatorDF947_00125Not AvailableNegative25081 - 2586329724.9
histidine kinaseDF947_00130Not AvailableNegative25848 - 29024120497.0
tonb-dependent receptorDF947_00135Not AvailablePositive29706 - 32795110767.0
ragb/susd family nutrient uptake outer membrane proteinDF947_00140Not AvailablePositive32809 - 3427253945.6

Displaying genes 21 – 30 of 4386 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.