Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter paludis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1583836 bp
Thymine Count
1566892 bp
Guanine Count
923446 bp
Cytosine Count
944055 bp
Genome Length
5018229 bp
Protein-coding Genes
4332 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DF947_14315 | Not Available | Negative | 3173442 - 3174863 | 53981.5 |
| phenylalanyl-trna synthetase subunit alpha | DF947_14320 | Not Available | Negative | 3175004 - 3175114 | 4292.07 |
| doxx family protein | DF947_14325 | Not Available | Positive | 3175330 - 3175788 | 16903.3 |
| peptidase m28 | DF947_14330 | Not Available | Positive | 3175833 - 3177536 | 63420.0 |
| virulence protein | DF947_14335 | Not Available | Negative | 3177565 - 3178014 | 17007.6 |
| phytoene desaturase | DF947_14340 | Not Available | Positive | 3178068 - 3179585 | 57328.5 |
| acyl-coa thioesterase | DF947_14345 | Not Available | Positive | 3179595 - 3179999 | 15089.2 |
| shikimate kinase | DF947_14350 | Not Available | Negative | 3180047 - 3180544 | 18780.8 |
| damage-inducible protein dinb | DF947_14355 | Not Available | Negative | 3180541 - 3180981 | 17020.4 |
| abc transporter permease | DF947_14360 | Not Available | Negative | 3180984 - 3182039 | 38893.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

