Pedobacter paludis

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter paludis is a species of bacteria characterized by its motility, attributed to the presence of flagella. This feature allows for movement within various environments, which may be significant for its ecological interactions. The organism has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in replication. The complete genomic data for Pedobacter paludis is accessible under the accession number QGNY00000000.1. This genomic information can provide insights into the metabolic pathways and ecological roles of the organism, although specific metabolic traits are not detailed here. In terms of ecological significance, the motility provided by flagella likely plays a crucial role in the survival and dispersal of Pedobacter paludis in its natural habitat. This could involve interactions with other microorganisms and participation in nutrient cycling within its ecosystem. Understanding such traits is essential for comprehending the role of Pedobacter paludis in environmental microbiology and its potential applications in bioremediation or other biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter paludis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter paludis strain R-8 contig61, whole genome shotgun

Gene Summary

Adenine Count

1583836 bp

Thymine Count

1566892 bp

Guanine Count

923446 bp

Cytosine Count

944055 bp

Genome Length

5018229 bp

Protein-coding Genes

4332 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDF947_13065Not AvailableNegative2921585 - 292275144327.2
thymidine kinaseDF947_13070Not AvailablePositive2922875 - 292345621312.7
nad(p)-dependent oxidoreductaseDF947_13075Not AvailablePositive2923663 - 292459234790.6
dna helicaseDF947_13080Not AvailableNegative2924624 - 2928013131244.0
transcriptional regulatorDF947_13085Not AvailablePositive2928211 - 292897827823.8
endonucleaseDF947_13090Not AvailableNegative2928975 - 292990734637.4
fad-dependent oxidoreductaseDF947_13095Not AvailableNegative2929911 - 293130850626.6
mfs transporterDF947_13100Not AvailableNegative2931346 - 293258445818.4
glycerophosphodiester phosphodiesteraseDF947_13105Not AvailableNegative2932606 - 293355635672.1
histidine phosphatase family proteinDF947_13110Not AvailableNegative2933569 - 293416822589.8

Displaying genes 2601 – 2610 of 4386 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.