Pedobacter paludis

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter paludis is a species of bacteria characterized by its motility, attributed to the presence of flagella. This feature allows for movement within various environments, which may be significant for its ecological interactions. The organism has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in replication. The complete genomic data for Pedobacter paludis is accessible under the accession number QGNY00000000.1. This genomic information can provide insights into the metabolic pathways and ecological roles of the organism, although specific metabolic traits are not detailed here. In terms of ecological significance, the motility provided by flagella likely plays a crucial role in the survival and dispersal of Pedobacter paludis in its natural habitat. This could involve interactions with other microorganisms and participation in nutrient cycling within its ecosystem. Understanding such traits is essential for comprehending the role of Pedobacter paludis in environmental microbiology and its potential applications in bioremediation or other biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter paludis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter paludis strain R-8 contig61, whole genome shotgun

Gene Summary

Adenine Count

1583836 bp

Thymine Count

1566892 bp

Guanine Count

923446 bp

Cytosine Count

944055 bp

Genome Length

5018229 bp

Protein-coding Genes

4332 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glucosamine-6-phosphate deaminaseDF947_07210Not AvailableNegative1658826 - 166074572247.0
anhydro-n-acetylmuramic acid kinaseDF947_07215Not AvailablePositive1660898 - 166209443699.3
susc/raga family tonb-linked outer membrane proteinDF947_07220Not AvailablePositive1662165 - 1665284112492.0
ragb/susd family proteinDF947_07225Not AvailablePositive1665302 - 166659746414.4
deor family transcriptional regulatorDF947_07230Not AvailableNegative1666638 - 166738427479.5
susc/raga family tonb-linked outer membrane proteinDF947_07235Not AvailablePositive1667629 - 1670721111547.0
susd/ragb family nutrient-binding outer membrane lipoproteinDF947_07240Not AvailablePositive1670726 - 167232759454.3
duf4397 domain-containing proteinDF947_07245Not AvailablePositive1672343 - 167310727694.3
tonb-dependent receptorDF947_07250Not AvailablePositive1673394 - 1676609117282.0
ragb/susd family nutrient uptake outer membrane proteinDF947_07255Not AvailablePositive1676618 - 167827361609.9

Displaying genes 1441 – 1450 of 4386 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.