Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter paludis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1583836 bp
Thymine Count
1566892 bp
Guanine Count
923446 bp
Cytosine Count
944055 bp
Genome Length
5018229 bp
Protein-coding Genes
4332 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| smi1/knr4 family protein | DF947_05145 | Not Available | Positive | 1183739 - 1184158 | 15843.8 |
| thioredoxin | DF947_05150 | Not Available | Negative | 1184223 - 1185377 | 41366.7 |
| arginase | DF947_05155 | Not Available | Negative | 1185468 - 1186649 | 44826.0 |
| nucleoside-diphosphate sugar epimerase | DF947_05160 | Not Available | Positive | 1186823 - 1187785 | 35184.4 |
| phosphoserine phosphatase | DF947_05165 | Not Available | Positive | 1187785 - 1189086 | 49299.4 |
| chloride channel protein | DF947_05170 | Not Available | Negative | 1189325 - 1190614 | 46463.3 |
| tryptophan 2,3-dioxygenase | DF947_05175 | Not Available | Positive | 1190759 - 1191724 | 37807.3 |
| branched chain amino acid aminotransferase | DF947_05180 | Not Available | Positive | 1191868 - 1192932 | 39437.8 |
| duf4920 domain-containing protein | DF947_05185 | Not Available | Negative | 1192997 - 1193461 | 17111.2 |
| dna repair protein rada | DF947_05190 | Not Available | Negative | 1193798 - 1195174 | 50226.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

