Flavobacterium crocinum str. HYN0056

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium crocinum strain HYN0056 is characterized as a rod-shaped bacterium with the presence of flagella, which likely contributes to its motility. This strain has been assigned the accession number NZ_CP029255.1, indicating its genomic data is available for further study. Notably, it possesses a single replicon, suggesting a relatively simple genomic organization that may influence its adaptability and metabolic capabilities. The presence of flagella in Flavobacterium crocinum str. HYN0056 may facilitate its movement in various environments, potentially allowing it to colonize diverse ecological niches. This motility can enhance its ability to seek out nutrients or evade unfavorable conditions, which is significant for survival and proliferation in competitive environments. Understanding the traits of Flavobacterium crocinum str. HYN0056 can provide insights into its ecological role, particularly in aquatic ecosystems, where members of the Flavobacterium genus are known to participate in the degradation of organic matter. This strain may contribute to nutrient cycling and the overall health of its environment, highlighting the importance of studying microbial diversity and function within ecological systems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium crocinum
StrainHYN0056

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium crocinum str. HYN0056
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium crocinum strain HYN0056 chromosome, complete

Gene Summary

Adenine Count

1935013 bp

Thymine Count

1944877 bp

Guanine Count

992504 bp

Cytosine Count

1005037 bp

Genome Length

5877431 bp

Protein-coding Genes

4872 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinHYN56_RS24370Not AvailableNegative5745556 - 574711858128.7
susc/raga family tonb-linked outer membrane proteinHYN56_RS24375Not AvailableNegative5747130 - 5750297114944.0
arac family transcriptional regulatorHYN56_RS24380Not AvailableNegative5750615 - 575149334117.9
glycoside hydrolase family 26 proteinHYN56_RS24385Not AvailablePositive5751801 - 575293743260.0
mfs transporterHYN56_RS24390Not AvailablePositive5752976 - 575436451687.3
glycosidaseHYN56_RS24395Not AvailablePositive5754394 - 575558444160.3
age family epimerase/isomeraseHYN56_RS24400Not AvailablePositive5755590 - 575678046424.7
carbohydrate binding domain-containing proteinHYN56_RS24405Not AvailablePositive5756814 - 575736220257.0
glycoside hydrolase family 26 proteinHYN56_RS24410Not AvailablePositive5757371 - 575860046306.2
glycoside hydrolase 5 family proteinHYN56_RS24415Not AvailablePositive5758767 - 576005349041.0

Displaying genes 4841 – 4850 of 4959 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.