Flavobacterium crocinum str. HYN0056

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium crocinum strain HYN0056 is characterized as a rod-shaped bacterium with the presence of flagella, which likely contributes to its motility. This strain has been assigned the accession number NZ_CP029255.1, indicating its genomic data is available for further study. Notably, it possesses a single replicon, suggesting a relatively simple genomic organization that may influence its adaptability and metabolic capabilities. The presence of flagella in Flavobacterium crocinum str. HYN0056 may facilitate its movement in various environments, potentially allowing it to colonize diverse ecological niches. This motility can enhance its ability to seek out nutrients or evade unfavorable conditions, which is significant for survival and proliferation in competitive environments. Understanding the traits of Flavobacterium crocinum str. HYN0056 can provide insights into its ecological role, particularly in aquatic ecosystems, where members of the Flavobacterium genus are known to participate in the degradation of organic matter. This strain may contribute to nutrient cycling and the overall health of its environment, highlighting the importance of studying microbial diversity and function within ecological systems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium crocinum
StrainHYN0056

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium crocinum str. HYN0056
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium crocinum strain HYN0056 chromosome, complete

Gene Summary

Adenine Count

1935013 bp

Thymine Count

1944877 bp

Guanine Count

992504 bp

Cytosine Count

1005037 bp

Genome Length

5877431 bp

Protein-coding Genes

4872 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i phosphomannose isomerase catalytic subunitHYN56_RS01380Not AvailableNegative289208 - 29017636338.2
peroxiredoxinHYN56_RS01385Not AvailableNegative290234 - 29069217056.6
6-carboxytetrahydropterin synthaseHYN56_RS01390Not AvailableNegative290696 - 29110615741.6
isopentenyl-diphosphate delta-isomeraseHYN56_RS01395Not AvailableNegative291128 - 29165521035.8
peptide-methionine (r)-s-oxide reductase msrbHYN56_RS01400Not AvailablePositive291980 - 29253120755.5
peptide-methionine (s)-s-oxide reductase msraHYN56_RS01405Not AvailablePositive292538 - 29314622842.5
meta domain-containing proteinHYN56_RS01410Not AvailableNegative293244 - 29367815975.4
is110 family transposaseHYN56_RS01415Not AvailableNegative294007 - 29498137413.3
giy-yig nuclease family proteinHYN56_RS01420Not AvailableNegative295274 - 29558812663.2
tetr/acrr family transcriptional regulatorHYN56_RS01425Not AvailablePositive295979 - 29658122661.9

Displaying genes 271 – 280 of 4959 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.