Polaribacter aquimarinus

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Polaribacter

Description

Polaribacter aquimarinus is a Gram-negative, rod-shaped bacterium notable for its single replicon. This organism is part of the genus Polaribacter, which is characterized by its adaptation to marine environments. The designation of Gram-negative indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of bacteria in this group and contributes to their ability to survive in diverse aquatic habitats. The complete genomic sequence of Polaribacter aquimarinus is cataloged under the accession number QFFG00000000.1. This genomic data provides insights into the genetic makeup of the species, although specific functional attributes and metabolic capabilities are not detailed in the provided traits. Biologically, the presence of Polaribacter aquimarinus in marine ecosystems highlights its potential role in biogeochemical cycles, particularly in nutrient recycling and organic matter decomposition. As a member of the polaribacter genus, this bacterium may contribute to the microbial diversity that supports the health and stability of marine environments. Understanding its ecological functions can enhance our knowledge of microbial interactions and ecosystem dynamics in oceanic settings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPolaribacter
SpeciesPolaribacter aquimarinus
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Polaribacter aquimarinus
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polaribacter aquimarinus


Gene Summary

Adenine Count

1174029 bp

Thymine Count

1183287 bp

Guanine Count

497542 bp

Cytosine Count

516993 bp

Genome Length

3371861 bp

Protein-coding Genes

2936 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive119 - 228Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive401 - 3272Not Available
duf4294 domain-containing proteinDIS07_00005Not AvailableNegative155 - 85327973.9
dna ligase (nad(+)) ligaDIS07_00010Not AvailableNegative993 - 299375278.3
hypothetical proteinDIS07_00015Not AvailableNegative2990 - 354421850.3
16s ribosomal rnaNot AvailableNot AvailablePositive3800 - 5323Not Available
hypothetical proteinDIS07_00020Not AvailableNegative3551 - 410820938.4
oxidoreductaseDIS07_00025Not AvailablePositive4292 - 552746724.5
sulfur relay protein dsrcDIS07_00030Not AvailablePositive5540 - 584811540.0
hypothetical proteinDIS07_00035Not AvailablePositive5866 - 634217707.0

Displaying genes 1 – 10 of 2979 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

481 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 481 metabolites

Health Effects

No health effects information available for this bacterium.