Polaribacter aquimarinus

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Polaribacter

Description

Polaribacter aquimarinus is a Gram-negative, rod-shaped bacterium notable for its single replicon. This organism is part of the genus Polaribacter, which is characterized by its adaptation to marine environments. The designation of Gram-negative indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of bacteria in this group and contributes to their ability to survive in diverse aquatic habitats. The complete genomic sequence of Polaribacter aquimarinus is cataloged under the accession number QFFG00000000.1. This genomic data provides insights into the genetic makeup of the species, although specific functional attributes and metabolic capabilities are not detailed in the provided traits. Biologically, the presence of Polaribacter aquimarinus in marine ecosystems highlights its potential role in biogeochemical cycles, particularly in nutrient recycling and organic matter decomposition. As a member of the polaribacter genus, this bacterium may contribute to the microbial diversity that supports the health and stability of marine environments. Understanding its ecological functions can enhance our knowledge of microbial interactions and ecosystem dynamics in oceanic settings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPolaribacter
SpeciesPolaribacter aquimarinus
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Polaribacter aquimarinus
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polaribacter aquimarinus strain ZY113 contig20, whole genome

Gene Summary

Adenine Count

1174029 bp

Thymine Count

1183287 bp

Guanine Count

497542 bp

Cytosine Count

516993 bp

Genome Length

3371861 bp

Protein-coding Genes

2936 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc-dependent metalloproteaseDIS07_00380Not AvailablePositive85056 - 8749193094.3
duf2851 domain-containing proteinDIS07_00385Not AvailableNegative87537 - 8880849726.9
nad(p)h-dependent oxidoreductaseDIS07_00390Not AvailablePositive88921 - 8955324268.3
cytosol nonspecific dipeptidaseDIS07_00395Not AvailablePositive89577 - 9103153150.9
chromosome partitioning protein paraDIS07_00400Not AvailablePositive91225 - 9198927677.4
chromosome partitioning protein parbDIS07_00405Not AvailablePositive91991 - 9287533275.4
hypothetical proteinDIS07_00410Not AvailablePositive92876 - 9346922526.3
4-hydroxy-tetrahydrodipicolinate reductaseDIS07_00415Not AvailablePositive93471 - 9417225712.8
signal peptidase iDIS07_00420Not AvailablePositive94252 - 9595565143.0
hypothetical proteinDIS07_00425Not AvailablePositive95958 - 9655723771.2

Displaying genes 81 – 90 of 2979 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

481 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 481 metabolites

Health Effects

No health effects information available for this bacterium.