Methylibium sp. Pch-M

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Sphaerotilaceae

Genus

Methylibium

Description

Methylibium sp. Pch-M is a Gram-negative bacterium characterized by its bacilli shape and the presence of flagella. This motility feature suggests that Methylibium sp. Pch-M can actively move in its environment, which may be advantageous for colonization and nutrient acquisition. The genome of Methylibium sp. Pch-M contains a single replicon, indicating a streamlined genetic organization that can facilitate efficient replication and cellular function. The accession number for its genomic sequence is NZ_CP029606.1, which provides a basis for further research into its genetic and metabolic capabilities. Methylibium species are often associated with the methylotrophic metabolism, where they utilize methanol and other one-carbon compounds as carbon sources. This metabolic adaptability may allow Methylibium sp. Pch-M to thrive in various ecological niches, particularly in environments rich in methylated compounds. The ecological insight derived from the traits of Methylibium sp. Pch-M suggests its potential role in biogeochemical cycles, particularly in the degradation of methanol and other related compounds. Such capabilities could contribute to the cycling of carbon in ecosystems, making Methylibium sp. Pch-M a potential player in the microbial communities that shape soil and aquatic environments. Understanding its traits and ecological roles can enhance our knowledge of microbial diversity and function in natural habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusMethylibium
SpeciesMethylibium sp. Pch-M
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Methylibium sp. Pch-M
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methylibium sp. Pch-M


Gene Summary

Adenine Count

599552 bp

Thymine Count

597004 bp

Guanine Count

1369826 bp

Cytosine Count

1374755 bp

Genome Length

3941137 bp

Protein-coding Genes

3701 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive585760 - 585773Not Available
Putative tail fiber proteinC1M51_RS02760Not AvailableNegative586231 - 58890993374.0
Structural proteinC1M51_RS02765Not AvailableNegative588940 - 59144791211.0
hypothetical proteinC1M51_RS02770Not AvailablePositive591448 - 5916456860.84
Slt domain-containing tail structural proteinC1M51_RS02775Not AvailableNegative591635 - 59358768558.1
Hypothetical proteinC1M51_RS02780Not AvailableNegative593587 - 59580979979.4
Hypothetical proteinC1M51_RS02785Not AvailableNegative595809 - 59631517681.8
Hypothetical proteinC1M51_RS02790Not AvailableNegative596315 - 59673115122.2
Hypothetical proteinC1M51_RS02795Not AvailableNegative596728 - 59892379388.4
Hypothetical proteinC1M51_RS02800Not AvailableNegative598920 - 59950121213.4

Displaying genes 1 – 10 of 3807 in total

Metabolites

243 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da

Displaying 1–10 of 243 metabolites

Health Effects

No health effects information available for this bacterium.