Rathayibacter sp. AY1C5

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter sp. AY1C5 is a Gram-positive bacterium characterized by its rod shape. It possesses a single replicon, which indicates a streamlined genomic structure that may facilitate efficient replication and stability within its environment. The organism is cataloged under the accession number PSWD00000000.1, providing a reference point for further studies and comparisons within the Rathayibacter genus. The Gram-positive nature of Rathayibacter sp. AY1C5 suggests that it has a thick peptidoglycan layer in its cell wall, a feature that is often associated with a variety of ecological roles, including resistance to certain environmental stressors. Gram-positive bacteria are generally known for their ability to survive in diverse habitats, which may confer ecological advantages in various niches. Understanding the specific traits of Rathayibacter sp. AY1C5, including its morphology and genetic structure, is essential for elucidating its potential ecological functions and interactions within microbial communities. Its rod shape may influence its motility and ability to colonize different substrates, while the presence of a single replicon could suggest a robust mechanism for maintaining genomic integrity under varying conditions. This bacterium's characteristics may play a role in its interactions with other microorganisms, host organisms, or the environment, highlighting its significance in microbial ecology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter sp. AY1C5
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter sp. AY1C5 AY1C5_93, whole genome shotgun sequence.

Gene Summary

Adenine Count

510507 bp

Thymine Count

509409 bp

Guanine Count

1310839 bp

Cytosine Count

1319937 bp

Genome Length

3650703 bp

Protein-coding Genes

3379 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
riboflavin synthaseC5C57_09520Not AvailablePositive1990899 - 199152521704.2
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase iiC5C57_09525Not AvailablePositive1991522 - 199284446780.8
6,7-dimethyl-8-ribityllumazine synthaseC5C57_09530Not AvailablePositive1992847 - 199332015780.7
mfs transporterC5C57_09535Not AvailablePositive1993508 - 199485447412.0
abc transporterC5C57_09540Not AvailablePositive1994982 - 199679663467.6
3-hydroxyacyl-coa dehydrogenaseC5C57_09545Not AvailableNegative1996912 - 199765525047.4
hypothetical proteinC5C57_09550Not AvailableNegative1997658 - 199809514557.9
rrna methyltransferaseC5C57_09555Not AvailableNegative1998222 - 199902528051.9
nad-dependent succinate-semialdehyde dehydrogenaseC5C57_09560Not AvailableNegative1999030 - 200051752184.4
nicotinamidaseC5C57_09565Not AvailableNegative2000671 - 200124619855.1

Displaying genes 1881 – 1890 of 3453 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.