Vibrio sp. F13

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. F13 is characterized by the presence of three replicons, indicating a complex genomic structure. This trait suggests a potential adaptability to various environmental conditions, which is often observed in members of the Vibrio genus. The organism's genomic sequences can be accessed through the following accession numbers: SYUZ00000000.1, SYVM00000000.1, and SYVN00000000.1. The presence of multiple replicons may play a significant role in the organism's ability to acquire genetic material from its surroundings, contributing to its versatility and potential pathogenicity. This trait is particularly relevant in aquatic environments, where Vibrio species are frequently found and can interact with various hosts, including humans, marine animals, and other microorganisms. Understanding the genomic architecture of Vibrio sp. F13 provides insights into its ecological role and potential interactions within marine ecosystems. The complex gene repertoire associated with multiple replicons may enhance its survival in fluctuating environments and its ability to form symbiotic relationships or exhibit pathogenic behaviors. Overall, the genomic characteristics of Vibrio sp. F13 reflect its ecological significance and adaptability in marine habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. F13
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. F13
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. F13


Gene Summary

Adenine Count

1409896 bp

Thymine Count

1405799 bp

Guanine Count

1125448 bp

Cytosine Count

1135360 bp

Genome Length

5096039 bp

Protein-coding Genes

4413 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
n-acetyltransferaseFCV85_00005Not AvailablePositive44 - 50816391.7
5s ribosomal rnaNot AvailableNot AvailablePositive214 - 329Not Available
gnat family n-acetyltransferaseFCV85_00010Not AvailablePositive578 - 109619410.8
duf417 family proteinFCV85_00015Not AvailableNegative1212 - 165816080.0
rida family proteinFCV85_00020Not AvailablePositive1940 - 230213455.0
bcct family transporterFCV85_00025Not AvailableNegative2431 - 401756818.4
chitinaseFCV85_00035Not AvailablePositive4494 - 7661111563.0
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive4600 - 5039Not Available
diguanylate cyclaseFCV85_00040Not AvailablePositive7956 - 941955713.2
ygjv family proteinFCV85_00045Not AvailableNegative9555 - 98099286.78

Displaying genes 1 – 10 of 13236 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

83 records
Metabolite IDMetabolite nameStructureCAS number
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000738D-lyxoseC5H10O5Chemical structure of D-lyxose1114-34-7
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001358lactateC3H5O3Chemical structure of lactateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm0001514Fe(III)-enterobactinC30H21FeN3O15Chemical structure of Fe(III)-enterobactinNot available
Average719.344Da
Monoisotopic719.0322092Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 83 metabolites

Health Effects

No health effects information available for this bacterium.