Sphingobium sp. 20006FA

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. 20006FA is characterized by the presence of flagella, which are appendages that facilitate motility. This trait suggests that the organism is capable of movement, potentially allowing it to navigate its environment effectively in search of nutrients or suitable habitats. The strain possesses a single replicon, indicating that it has a streamlined genetic structure, which may be advantageous for rapid growth and adaptation. The accessions associated with this strain include LYMJ00000000.1, which provides a reference for genomic information and facilitates further research on its biology and ecology. The presence of flagella in Sphingobium sp. 20006FA may enhance its ecological role, particularly in environments where fluid movement is present, such as in soil or aquatic systems. The ability to move towards nutrient sources or away from harmful conditions could confer a competitive advantage in these ecosystems. Additionally, the streamlined genetic configuration suggests that Sphingobium sp. 20006FA may be well-adapted to specific ecological niches, possibly allowing it to play a role in biogeochemical cycles. In summary, Sphingobium sp. 20006FA exhibits traits such as flagella for motility and a single replicon that may contribute to its ecological adaptability and role in its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. 20006FA
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. 20006FA


Gene Summary

Adenine Count

966381 bp

Thymine Count

962924 bp

Guanine Count

1733034 bp

Cytosine Count

1746478 bp

Genome Length

5409713 bp

Protein-coding Genes

4854 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Gp70A8O16_19420Not AvailableNegative4198661 - 419907414222.8
hypothetical proteinA8O16_19425Not AvailableNegative4199156 - 419952113166.5
hypothetical proteinA8O16_19430Not AvailableNegative4199524 - 419997016292.5
Phage head-tail adaptorA8O16_19435Not AvailableNegative4200023 - 420034611500.8
hypothetical proteinA8O16_19440Not AvailableNegative4200343 - 420087919253.6
hypothetical proteinA8O16_19445Not AvailablePositive4200988 - 420147618361.1
Phage major capsid proteinA8O16_19450Not AvailableNegative4201559 - 420278843270.9
Phage head maturation proteaseA8O16_19455Not AvailableNegative4202923 - 420360325141.0
Portal proteinA8O16_19460P49859Negative4203590 - 420475342641.5
Terminase large subunitA8O16_19465P59217Negative4204886 - 420655661753.2

Displaying genes 1 – 10 of 4916 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

404 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da

Displaying 1–10 of 404 metabolites

Health Effects

No health effects information available for this bacterium.