Photorhabdus laumondii subsp. clarkei

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus laumondii subsp. clarkei is a Gram-negative, rod-shaped bacterium associated with host organisms. It exhibits a facultative oxygen requirement, allowing it to thrive in varying oxygen conditions. This bacterium possesses flagella, enabling mobility, and is categorized as mesophilic, indicating it grows optimally at moderate temperatures. Photorhabdus laumondii subsp. clarkei has a unique biological role, functioning as a symbiont. It is known to establish a relationship with certain nematodes, which aids in the nematode's ability to infect and kill insect hosts. This symbiotic relationship is essential for the life cycle of both the bacterium and the nematode. The bacterium is nonsporulating and contains a single replicon and two membranes, characteristics common among Gram-negative bacteria. These traits underscore the ecological significance of Photorhabdus laumondii subsp. clarkei in biological control. By partnering with nematodes, it can contribute to pest management by targeting agricultural pests, thus supporting sustainable practices. This relationship not only highlights the intricate dynamics of microbial interactions within ecosystems but also emphasizes the potential of exploiting such symbiotic associations for biocontrol strategies in agriculture. The accession number for this bacterium is NSCI00000000.1, which provides a reference point for further research and characterization.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus laumondii
Strainsubsp. clarkei

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Photorhabdus laumondii subsp. clarkei
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus laumondii subsp. clarkei strain BOJ-47

Gene Summary

Adenine Count

1470874 bp

Thymine Count

1465918 bp

Guanine Count

1085228 bp

Cytosine Count

1087366 bp

Genome Length

5109397 bp

Protein-coding Genes

4051 genes

Non-Coding Genes

247 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate dehydrogenase, hydrophobic membrane anchor proteinCKY01_20325Not AvailablePositive4590841 - 459118812943.5
succinate dehydrogenase flavoprotein subunitCKY01_20330Not AvailablePositive4591189 - 459295564583.0
succinate dehydrogenase iron-sulfur subunitCKY01_20335Not AvailablePositive4592992 - 459370826677.3
2-oxoglutarate dehydrogenase e1 componentCKY01_20340Not AvailablePositive4593975 - 4596782105343.0
dihydrolipoyllysine-residue succinyltransferaseCKY01_20345Not AvailablePositive4596797 - 459801744681.0
succinyl-coa ligase subunit betaCKY01_20350Not AvailablePositive4598185 - 459935141308.9
succinate--coa ligase subunit alphaCKY01_20355Not AvailablePositive4599354 - 460022929907.4
cytochrome d terminal oxidase subunit 1CKY01_20360Not AvailablePositive4600900 - 460246858191.3
cytochrome d ubiquinol oxidase subunit iiCKY01_20365Not AvailablePositive4602483 - 460362242466.8
cytochrome bd-i oxidase subunit cydxCKY01_20370Not AvailablePositive4603635 - 46037574474.38

Displaying genes 3861 – 3870 of 4298 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.