Photorhabdus laumondii subsp. clarkei

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus laumondii subsp. clarkei is a Gram-negative, rod-shaped bacterium associated with host organisms. It exhibits a facultative oxygen requirement, allowing it to thrive in varying oxygen conditions. This bacterium possesses flagella, enabling mobility, and is categorized as mesophilic, indicating it grows optimally at moderate temperatures. Photorhabdus laumondii subsp. clarkei has a unique biological role, functioning as a symbiont. It is known to establish a relationship with certain nematodes, which aids in the nematode's ability to infect and kill insect hosts. This symbiotic relationship is essential for the life cycle of both the bacterium and the nematode. The bacterium is nonsporulating and contains a single replicon and two membranes, characteristics common among Gram-negative bacteria. These traits underscore the ecological significance of Photorhabdus laumondii subsp. clarkei in biological control. By partnering with nematodes, it can contribute to pest management by targeting agricultural pests, thus supporting sustainable practices. This relationship not only highlights the intricate dynamics of microbial interactions within ecosystems but also emphasizes the potential of exploiting such symbiotic associations for biocontrol strategies in agriculture. The accession number for this bacterium is NSCI00000000.1, which provides a reference point for further research and characterization.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus laumondii
Strainsubsp. clarkei

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Photorhabdus laumondii subsp. clarkei
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus laumondii subsp. clarkei strain BOJ-47

Gene Summary

Adenine Count

1470874 bp

Thymine Count

1465918 bp

Guanine Count

1085228 bp

Cytosine Count

1087366 bp

Genome Length

5109397 bp

Protein-coding Genes

4051 genes

Non-Coding Genes

247 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
(2fe-2s)-binding proteinCKY01_13845Not AvailableNegative3076507 - 30767739990.13
ribonucleotide-diphosphate reductase subunit betaCKY01_13850Not AvailableNegative3076773 - 307790343386.5
ribonucleoside-diphosphate reductase subunit alphaCKY01_13855Not AvailableNegative3077916 - 308020786188.6
bifunctional 3-demethylubiquinol 3-o-methyltransferase/2-polyprenyl-6-hydroxyphenol methylaseCKY01_13860Not AvailableNegative3080576 - 308129827018.6
dna topoisomerase (atp-hydrolyzing) subunit aCKY01_13865Not AvailablePositive3081510 - 308414697480.6
two-component system sensor histidine kinase rcscCKY01_13870Not AvailablePositive3084309 - 3087125106950.0
transcriptional regulator rcsbCKY01_13875Not AvailableNegative3087212 - 308786523926.3
phosphotransferase rcsdCKY01_13880Not AvailableNegative3087870 - 3090560103492.0
Trna-serNot AvailableNot AvailablePositive3090774 - 3090861Not Available
lysine transporter lyseCKY01_13890Not AvailableNegative3091171 - 309179722379.0

Displaying genes 2701 – 2710 of 4298 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.