Flavobacterium sp. IR1

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium sp. IR1 is a rod-shaped bacterium notable for its possession of flagella, which suggests that it is motile. This genus is part of the larger family of Flavobacteriaceae, known for its diverse metabolic capabilities and ecological roles. Flavobacterium species are typically found in various aquatic environments and play important roles in the degradation of organic materials, contributing to nutrient cycling. Genomic data indicates that Flavobacterium sp. IR1 has a single replicon, which typically signifies a circular chromosome structure, common among many bacterial species. The accession number for its genomic sequence is NQOT00000000.1, which allows for further investigation and comparison with other strains within the Flavobacterium genus or related taxa. The motility conferred by flagella may enhance the bacterium's ability to navigate its environment, potentially influencing its interactions with other microorganisms and its capacity to colonize various niches. This adaptability is crucial in ecological contexts, particularly in aquatic systems where competition for resources can be intense. In summary, Flavobacterium sp. IR1's rod shape, motility due to flagella, and genomic structure with a single replicon underscore its ecological versatility and potential roles in environmental microbiology, particularly in the degradation of organic matter in aquatic habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium sp. IR1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium sp. IR1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium sp. IR1 voucher personal:Colin Ingham:55-SRNP-2012

Gene Summary

Adenine Count

1906786 bp

Thymine Count

1890606 bp

Guanine Count

992099 bp

Cytosine Count

1023548 bp

Genome Length

5813039 bp

Protein-coding Genes

5475 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ai-2e family transporterB4N84_00160Not AvailableNegative13434 - 1401321947.7
tetr family transcriptional regulatorB4N84_00165Not AvailableNegative14032 - 1447217185.7
hypothetical proteinB4N84_00170Not AvailablePositive14473 - 1500319726.0
flagellar capping proteinB4N84_00175Not AvailableNegative15004 - 1540314766.3
thiol reductant abc exporter subunit cydcB4N84_00190Not AvailableNegative16804 - 1719514323.1
alpha-amylaseB4N84_00195Not AvailableNegative17196 - 1757514307.3
diaminopimelate decarboxylaseB4N84_00200Not AvailableNegative17576 - 1799815281.8
serine hydroxymethyltransferaseB4N84_00205Not AvailablePositive18085 - 182877276.82
hypothetical proteinB4N84_00210Not AvailableNegative18382 - 185797441.45
5'/3'-nucleotidase sureB4N84_00215Not AvailableNegative18572 - 186844197.85

Displaying genes 31 – 40 of 5544 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.